bpExperimentNames |
A Character Vector Containing the Names of the
13 Graph Objects Stored in this Data Package |
Cagney2001BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Cagney et al. 2001. |
collectIntactPPIData |
A function that parses the Intact repository for bait to prey affiliation |
createBPList |
A function to create the Bait to Prey association list. |
Gavin2002BPGraph |
A directed Graph for the AP-MS Bait to Prey Interaction
data detected by Gavin et al. 2002. |
Gavin2006BPGraph |
A directed Graph for the AP-MS Bait to Prey Interaction
data detected by Gavin et al. 2006. |
Hazbun2003BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Hazbun et al. 2003. |
Ho2002BPGraph |
A directed Graph for the AP-MS Bait to Prey Interaction
data detected by Ho et al. 2002. |
intAct2Sys |
A function that maps the Intact ID's to the first org.Sc.sgd
systematic name using the org.Sc.sgd package |
intActPPIData |
A data set documenting the output of collectIntactPPIData |
Ito2001BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Ito et al. 2001. |
ItoCore2001BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Ito et al. 2001. |
ItoFull2001BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Ito et al. 2001. |
Krogan2004BPGraph |
A directed Graph for the AP-MS Bait to Prey Interaction
data detected by Krogan et al. 2004. |
Krogan2006BPGraph |
A directed Graph for the AP-MS Bait to Prey Interaction
data detected by Krogan et al. 2006. |
map2Systematic |
A function that maps the Intact ID's to Yeast Systematic Names if
possible |
map2Systematic2 |
A secondary function that maps the Intact ID's to Yeast Systematic Names if
possible |
ppipred |
Protein-protein predictions |
stochasticBaits |
Lists of viable baits in each bait to prey dataset which
are conjectured not to be systematically biased. |
sWAC2Sys |
A data set that contains the translation between Swiss accension
codes to Gene Systematic Names |
tableList |
A list of tables for the downloaded and parsed xml files from the
IntAct database |
Tong2002BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Tong et al. 2002. |
twTableAPMS |
A table to look at the permutation statistics of pairs of Y2H
experiment. |
twTableY2H |
A table to look at the permutation statistics of pairs of Y2H
experiment. |
Uetz2000BPGraph1 |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Uetz et al. 2000. |
Uetz2000BPGraph2 |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Uetz et al. 2000. |
viableBaits |
Lists of viable prey or baits in each bait to prey dataset |
viablePrey |
Lists of viable prey or baits in each bait to prey dataset |
y2h |
A data set documenting the bait to prey associations for the
y2h empirical data-sets as found within the IntAct repository. |
y2hSysGW |
A data object documenting the bait to prey associations for
the y2h empirical data-sets with two restrictions. |
Zhao2005BPGraph |
A directed Graph for the Y2H Bait to Prey Interaction
data detected by Zhao et al. 2005. |